基于网络药理学及分子对接预测安子调冲方中 和血中药对免疫相关复发性流产的作用机制
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何珊,女,副主任中药师,主要研究方向是生殖用中药的药理。

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R 714.21

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国家自然科学基金项目(82104576);广东省基础与应用基础研究基金项目(2019A1515110579、 2023A1515012513);广东省中医药局科研项目(20201292、20231280);深圳市科技计划项目基础 研究(面上项目)(JCYJ20210324130013033、JCYJ20210324130012031);鹏城岐黄工程深圳市中药 特色技术传承人才培养项目(2023–2025 年)。


Prediction of the Mechanism of Herbs of Anzi Tiaochong Fang with a Harmonizing Effect on Blood on Immunerelated Recurrent Pregnancy Losses Based on Network Pharmacology and Molecular Docking
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    摘要:

    摘 要目的:应用网络药理学及分子对接技术探讨安子调冲方(ATF)中起和血作用的鸡血藤 – 蒲黄炭(JXT–PHT) 对治疗免疫相关复发性流产(IRRPL)的作用机制,为进一步对 ATF 的拆方研究奠定基础。 方法:利用 TCMSP 和 HERB 数据库进行化合物成分检索,在 Swiss Target Prediction 数据库预测药物作用靶点。使用 Genecards 和 ImmPort 数据库获取 IRRPL 相关靶点。利用 jvenn 绘制韦恩图,得到潜在作用靶点。在 STRING 数据库构建蛋白互作(PPI)网络,并分析关键 作用靶点。构建 “ 和血作用中药 – 成分 – 靶点 – 疾病 ” 网络,在 Cytoscape 3.10.0 中可视化,并分析核心成分。应用 DAVID (v2023q1)数据库,对潜在作用靶点进行基因本体(GO)和京都基因和基因组数据库(KEGG)功能富集分析。最后通过 AutoDock–Vina(v1.2.5)对关键作用靶点和核心成分执行分子对接,在 PyMOL 2.5 进行可视化。 结果:共筛选出 ATF 中起 和血作用的 JXT–PHT 31 个活性成分,预测靶点 586 个,IRRPL 相关靶点 226 个,潜在作用靶点 38 个,构建 PPI 网络并分 析后得到 4 个核心作用靶点。构建 “ 和血作用中药 – 成分 – 靶点 – 疾病 ” 网络并分析后得到 3 个核心成分。潜在作用靶点 富集了 277 条 GO 条目和 86 条 KEGG 条目。 结论:ATF 中的和血中药 JXT–PHT 可能与炎症反应、核糖核酸(RNA)聚合 酶 II 启动子的转录正调控、正调节细胞迁移及正向调控 MAPK 级联反应等密切相关,并通过 PI3K–AKT、Th17 细胞分化、 白细胞介素 –17(IL–17)、Rap1 和肿瘤坏死因子(TNF)等信号通路发挥治疗 IRRPL 的作用。

    Abstract:

    AbstractObjective To investigate the mechanism of Jixueteng and Puhuangtan (JXT-PHT), two components of the Anzi Tiaochong Fang (ATF) with a harmonizing effect on blood, in the treatment of immune-related recurrent pregnancy losses (IRRPL) based on network pharmacology and molecular docking techniques to lay the foundation for further dissection of the ATF. Methods Using the TCMSP and HERB databases for component retrieval, the Swiss Target Prediction database was used to predict drug targets. The Genecards and ImmPort databases were used to obtain IRRPL targets. A Venn diagram was drawn using jvenn. A protein-protein interaction (PPI) network was constructed in the STRING database, and key targets were analyzed. A "herb for harmonizing blood-component-target-disease" network was constructed, and the core components were analyzed using Cytoscape 3.10.0 for visualization. The DAVID (v2023q1) database was used for gene ontology (GO) and Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis of potential targets. Finally, molecular docking was performed using AutoDock-Vina (v1.2.5), and PyMOL 2.5 was used for visualization. Results The screening identified 31 active components in JXT-PHT that have a harmonizing effect on blood in the ATF. 586 potential targets were predicted and 226 IRRPL targets were screened. After constructing a protein-protein interaction (PPI) network and analysis, 38 potential targets were identified. Four core targets were identified through PPI network analysis. A "herbs for harmonizing blood-component-target-disease" network was constructed, and three core components were identified through analysis. The potential targets were enriched in 277 GO terms and 86 KEGG terms. Conclusion Based on the results of this study, it can be concluded that the Chinese herbal medicine JXT and PHT, which have a harmonizing effect on blood in ATF, may be closely related to inflammatory responses, positive regulation of transcription from ribonucleic acid (RNA) polymerase II promoter, positive regulation of cell migration, and positive regulation of MAPK cascade. They exert their therapeutic effects on IRRPL through signaling pathways such as PI3K-AKT, Th17 cell differentiation, interleukin–17 (IL–17), Rap1, and tumor necrosis factor (TNF).

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  • 收稿日期:2023-05-20
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  • 在线发布日期: 2023-09-12
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